PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000094.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 200aa    MW: 20745.9 Da    PI: 6.679
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000094.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.44.5e-5821116297
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk+yl
  Itr_sc000094.1_g00002.1  21 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYL 106
                              89************************************************************************************ PP

                    NF-YB  88 kkyrelegek 97 
                              +kyrelegek
  Itr_sc000094.1_g00002.1 107 AKYRELEGEK 116
                              ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.2E-5517124IPR009072Histone-fold
SuperFamilySSF471134.35E-4123127IPR009072Histone-fold
PfamPF008085.8E-282690IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.6E-215472No hitNo description
PROSITE patternPS0068505773IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.6E-217391No hitNo description
PRINTSPR006153.6E-2192110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MADSDNDSGG HNGGASRDSA REQDRFLPIA NVSRIMKKAL PANAKISKDA KETVQECVSE  60
FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEEYVE PLKIYLAKYR ELEGEKTSLG  120
RPGEKDGSGG SGGGGASAGG GAGIGHAAGF NGGAPSSAGM YGGVGGSMMY NQGQMYHQPG  180
SYHHMDMGGG GGGGSAVRQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4921111292Transcription factor HapC (Eurofung)
4g92_B2e-4921111292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311582e-89KT031158.1 Glycine max clone HN_CCL_197 CCAAT transcription factor (Glyma15g12570.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010644567.12e-83PREDICTED: nuclear transcription factor Y subunit B-3
RefseqXP_003634760.12e-83PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotO233103e-76NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLD7UAG53e-83D7UAG5_VITVI; Putative uncharacterized protein
STRINGVIT_19s0015g00440.t017e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-67nuclear factor Y, subunit B3